miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Daphnia pulex, Artemia franciscana, Daphnia magna



ABOUT THIS RECORD

ID: MNEST008594
species: Daphnia pulex
miRNA family: mir-34
source: miRNEST

Taxonomy by NCBI:
Daphnia pulex Daphnia Daphniidae Anomopoda Cladocera Diplostraca Phyllopoda Branchiopoda Crustacea Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GGCAGTGTGGCTAGCTGGTTG

miRNA*
GCCACTATCCAAACTGTCCA

mismatches: 2
bulges: 1

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pre-miRNA
GCAAAAAGTGTATTGATGGTTGGCAGTGTGGCTAGCTGGTTGTGAAATATTTAATTGAATCCACAGCCACTATCCAAACTGTCCACTGTCGATGACACGA
TAT


dot-bracket secondary structure
.......(((((((((((((.((((((.(((.(((.((((((((....((((....)))).))))))))))).))).)))))).))))))))).))))..
...



SIMILARITIES
miRBase dpu-mir-34: 2e-45

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-449: 0.0003
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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