miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST008650
species: Brassica oleracea
miRNA family: MIRf917
source: miRNEST

Taxonomy by NCBI:
Brassica oleracea Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GCTCTCTCTCTTCTGTCAACG

miRNA*
 TTTACACAGATAGAAAGCGG

mismatches: 4
bulges: 1
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pre-miRNA
 AAACACGAAATCTGAAGAAACGTTTACACAGATAGAAAGCGGCTTTACTTTGAGCTTCCAGAGGGGCCATGGCCGCCCTGATGAGCAGGTGGTTGCTGGT
AGCAGCCGCTCTCTCTCTCCGTATCAAACCTCTGGCGGGTTCCAACTTCCCAGCAAAGGTGTAGGAGAATACTCAGGAGGTCTCAATGAATCGCAAGATT
TCTACAGTGCTCTCTCTCTTCTGTCAACGTCTTCGGATTCACGTGGGA

dot-bracket secondary structure
...((((.((((((((((..((((.(((.(((.(((.((((.((.((..((((((((((.(((((((.......)))).((.(((..((((((((((...
)))))))))))))))(((((.......((((((((.((((....)))).))))...))))...)))))...))).))))).))))).(((((....))))
).)).)))))).))).)))..))).))))))))))))))..))))...


SIMILARITIES
miRBase far-MIR156b: 0.00005

PMRD ath-miR156s: 0.0000000000009

microPC miR157: 0.0002		UniProt sp|Q8S9L0|SPL10_ARATH: 0.000000000000001

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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