miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST008650
species: Brassica oleracea
miRNA family: MIRf917
source: miRNEST

Taxonomy by NCBI:
Brassica oleracea Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GCTCTCTCTCTTCTGTCAACG

miRNA*
TTTACACAGATAGAAAGCGG

mismatches: 4
bulges: 1

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pre-miRNA
AAACACGAAATCTGAAGAAACGTTTACACAGATAGAAAGCGGCTTTACTTTGAGCTTCCAGAGGGGCCATGGCCGCCCTGATGAGCAGGTGGTTGCTGGT
AGCAGCCGCTCTCTCTCTCCGTATCAAACCTCTGGCGGGTTCCAACTTCCCAGCAAAGGTGTAGGAGAATACTCAGGAGGTCTCAATGAATCGCAAGATT
TCTACAGTGCTCTCTCTCTTCTGTCAACGTCTTCGGATTCACGTGGGA


dot-bracket secondary structure
...((((.((((((((((..((((.(((.(((.(((.((((.((.((..((((((((((.(((((((.......)))).((.(((..((((((((((...
)))))))))))))))(((((.......((((((((.((((....)))).))))...))))...)))))...))).))))).))))).(((((....))))
).)).)))))).))).)))..))).))))))))))))))..))))...



SIMILARITIES
miRBase far-MIR156b: 0.00005

PMRD ath-miR156s: 0.0000000000009

microPC miR157: 0.0002
UniProt sp|Q8S9L0|SPL10_ARATH: 0.000000000000001

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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