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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST008657
species: Brassica oleracea
miRNA family: miR160a
source: miRNEST

Taxonomy by NCBI:
Brassica oleracea Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GCGTATGAGGAGCCATGCATA

miRNA*
 TGCCTGGCTCCCTGTATGCCA

mismatches: 2
bulges: 0
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pre-miRNA
 GCATATGTGTAGTTGTATAAGATGTGTATGCCTGGCTCCCTGTATGCCATCCTCTAAGCTCATCGACCATTGATGACCTCCGTGAATGGCGTATGAGGAG
CCATGCATATTTTCATATACATTTACATACGTTT

dot-bracket secondary structure
.....(((((((.((((((.((...((((((.(((((((.((((((((((..((..((.(((((((...))))))).))....)))))))))))).))))
))).))))))..)).)))))).))))))).....


SIMILARITIES
miRBase bra-MIR160a: 6e-68

PMRD bra-miR160a: 6e-68

microPC miR160: 3e-39		UniProt no hits

RFAM mir-160: 4e-20		most similar mature miRNAs

Identical with: miR160 from microPC (MNEST046225)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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