ABOUT THIS RECORDspecies: Petromyzon marinus
miRNA family: miR-1175
source: miRNEST
Taxonomy by NCBI:
Petromyzon marinus Petromyzon Petromyzontidae Petromyzontiformes Hyperoartia Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGGATTCTCCTTCTCCGACG miRNA* TCCGAGAATGGGCCCTTCCACG mismatches: 4 bulges: 1 |
pre-miRNA
GACGGTTTCCTGTCCGAGAATGGGCCCTTCCACGTGAACAATGACGGGCGGACTCTGTACTACAACAACGACAGTTGGAACCAGGTGGCCAACATCCTGT
ACCTCGAGTCTCCCGCTGGCGTGGGATTCTCCTTCTCCGACGACAAGAACT
dot-bracket secondary structure
...(((((..((((.(((((.(((...((((((((...((....((((.((((((.((((.........((..(((((.((...))..))))).))..))
))...)))))))))).))))))))))..))).))))).))))....)))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GACGGTTTCCTGTCCGAGAATGGGCCCTTCCACGTGAACAATGACGGGCGGACTCTGTACTACAACAACGACAGTTGGAACCAGGTGGCCAACATCCTGT
ACCTCGAGTCTCCCGCTGGCGTGGGATTCTCCTTCTCCGACGACAAGAACT
dot-bracket secondary structure
...(((((..((((.(((((.(((...((((((((...((....((((.((((((.((((.........((..(((((.((...))..))))).))..))
))...)))))))))).))))))))))..))).))))).))))....)))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|P10619|PPGB_HUMAN: 0.00000000000008 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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