ABOUT THIS RECORDspecies: Petromyzon marinus
miRNA family: mir-9
source: miRNEST
Taxonomy by NCBI:
Petromyzon marinus Petromyzon Petromyzontidae Petromyzontiformes Hyperoartia Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTTTGGTTATCTAGCTGTAT miRNA* AAAGCTAGATAACCGAAAGTA mismatches: 2 bulges: 0 |
pre-miRNA
GTAGGTGGTATCTTTGGTTATCTAGCTGTATGAGTGTGTCTGGCCGTCATAAAGCTAGATAACCGAAAGTACCAACGA
dot-bracket secondary structure
.....((((((.(((((((((((((((.(((((..((.....))..))))).))))))))))))))).))))))....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GTAGGTGGTATCTTTGGTTATCTAGCTGTATGAGTGTGTCTGGCCGTCATAAAGCTAGATAACCGAAAGTACCAACGA
dot-bracket secondary structure
.....((((((.(((((((((((((((.(((((..((.....))..))))).))))))))))))))).))))))....
SIMILARITIES| miRBase pma-mir-9a-2: 5e-39 PMRD no hits microPC no hits | UniProt no hits RFAM mir-9: 5e-18 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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