ABOUT THIS RECORDspecies: Oreochromis niloticus
miRNA family: mir-133
source: miRNEST
Taxonomy by NCBI:
Oreochromis niloticus Oreochromis Tilapiini Pseudocrenilabrinae African cichlids Cichlidae Labroidei Perciformes Percomorpha Euacanthopterygii Acanthopterygii Holacanthopterygii Euacanthomorpha Acanthomorpha Ctenosquamata Eurypterygii Neoteleostei Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCTGGTTGAAGGGGACCAA miRNA* GGTTCCATTTTACCAGCTTTA mismatches: 3 bulges: 0 |
pre-miRNA
GTAGTCATCAAAGCATAGCTACAGCTGGTTGAAGGGGACCAAATCCATTCAAGAGGTGATTTGGTTCCATTTTACCAGCTTTAGCAAAGCATTGTGGAGT
C
dot-bracket secondary structure
....((..(((.((...((((.(((((((.(((.(((((((((((...((....)).))))))))))).))).))))))).))))...)).)))..))..
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SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GTAGTCATCAAAGCATAGCTACAGCTGGTTGAAGGGGACCAAATCCATTCAAGAGGTGATTTGGTTCCATTTTACCAGCTTTAGCAAAGCATTGTGGAGT
C
dot-bracket secondary structure
....((..(((.((...((((.(((((((.(((.(((((((((((...((....)).))))))))))).))).))))))).))))...)).)))..))..
.
SIMILARITIES| miRBase dre-mir-133a-1: 8e-45 PMRD no hits microPC no hits | UniProt no hits RFAM mir-133: 2e-27 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
