ABOUT THIS RECORDspecies: Helobdella robusta
miRNA family: miR-4172
source: miRNEST
Taxonomy by NCBI:
Helobdella robusta Helobdella Glossiphoniidae Rhynchobdellida Hirudinea Hirudinida Clitellata Annelida Annelida/Echiura/Pogonophora group Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TATTATGTCATATATTTAG miRNA* AAGAATATTACAGAATAAA mismatches: 3 bulges: 0 |
pre-miRNA
AATTTATTATGTCATATATTTAGTATCTAAAATCTCGCACAACCATTATTTTTTTGCTGTTTGTCTAAGAATATTACAGAATAAAA
dot-bracket secondary structure
..((((((.(((.((((.(((((....((((.....(((.((.........)).)))..)))).))))).)))).))).)))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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AATTTATTATGTCATATATTTAGTATCTAAAATCTCGCACAACCATTATTTTTTTGCTGTTTGTCTAAGAATATTACAGAATAAAA
dot-bracket secondary structure
..((((((.(((.((((.(((((....((((.....(((.((.........)).)))..)))).))))).)))).))).)))))).
SIMILARITIES| miRBase cin-mir-4172: 0.0002 PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
