miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST000879
species: Helianthus petiolaris
miRNA family: MIR166
source: miRNEST

Taxonomy by NCBI:
Helianthus petiolaris Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGGACCAGGCTTCATTCC

miRNA*
 AATGTTGTCTGGCTCGAGA

mismatches: 3
bulges: 0
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pre-miRNA
 TTCTTTTGTGGGGAATGTTGTCTGGCTCGAGACCACAAGAAAGCTTCAATCTTTATAATCTTTATGTTACATAATCACATAATTGATCAATCTTTGTTGA
TCAATGATTAAAGATTAGAATCTTGTGTTGTCGGACCAGGCTTCATTCCCCTCATGTGT

dot-bracket secondary structure
......((.((((((((..((((((.((((...(((((((....(((((((((((..(((.((((((.........))))))(((((((((....)))))
)))).))))))))))).))))))))))...)))).))))))..)))))))).)).....


SIMILARITIES
miRBase ctr-MIR166: 0.000000008

PMRD aqc-miR166e: 0.000000008

microPC miR166: 8e-77		UniProt no hits

RFAM mir-166: 0.0000006		most similar mature miRNAs

Identical with: miR166 from microPC (MNEST044803)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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