miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Panax ginseng, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus

ABOUT THIS RECORD

ID: MNEST000891
species: Helianthus tuberosus
miRNA family: MIR414
source: miRNEST

Taxonomy by NCBI:
Helianthus tuberosus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
ATTTCTTCATCATCATCGTCA

miRNA*
ACGATAGTGAAAGGACCTG

mismatches: 3
bulges: 2

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pre-miRNA
TTTATATCCAGATTTCTTCATCATCATCGTCATCGCCTGCAACTAAACCACAACCGATCAACATTCTTTCTTTCTTACTCCATGACGATAGTGAAAGGAC
CTGCTTCGAAC

dot-bracket secondary structure
........(((..(((((..((((.((((((((................................................)))))))).))))))))).
)))........

SIMILARITIES

miRBase ath-MIR414: 0.0003

PMRD ghr-miR414b: 0.00002

microPC no hits

UniProt no hits

RFAM no hits

most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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