ABOUT THIS RECORDspecies: Ipomoea nil
miRNA family: MIR2673
source: miRNEST
Taxonomy by NCBI:
Ipomoea nil Ipomoea Ipomoeeae Convolvulaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTCTTCCTCTTCTTCTTCTT miRNA* GAAGATGAAGGGAAGGGAA mismatches: 2 bulges: 2 |
pre-miRNA
TAGGATGAAGTAGAAGATGAAGGGAAGGGAAGGGATTTGATGTAGGCAACATACAATTAAAGAGGAGAAAAATGGGAATGGAGAATCGGTATAGGAGTGA
AGATGAACCTTTAGGAAAGCCCTATAGGAGTAAGCACAATAATGTTCATGATCAGCTTCTTGAATGCACAACTTCTGGTTCCTCCTCTTCTTTATCCTCA
CCTGTAGAATCCCCCTCCTCTTCCTCTTCTTCTTCTTCTTCTTCCC
dot-bracket secondary structure
..(((.((((.((((((.((((((((((((.(((((((....((((...........((((((((((......((((.(((((.....((((((((((..
.(((...(((.((((.....)))).))).((.((((......)))).)).))).))))))...)))).....))))).))))..))))))))))......
))))..)))))))..))).))))).)))).)))))).)))).))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TAGGATGAAGTAGAAGATGAAGGGAAGGGAAGGGATTTGATGTAGGCAACATACAATTAAAGAGGAGAAAAATGGGAATGGAGAATCGGTATAGGAGTGA
AGATGAACCTTTAGGAAAGCCCTATAGGAGTAAGCACAATAATGTTCATGATCAGCTTCTTGAATGCACAACTTCTGGTTCCTCCTCTTCTTTATCCTCA
CCTGTAGAATCCCCCTCCTCTTCCTCTTCTTCTTCTTCTTCTTCCC
dot-bracket secondary structure
..(((.((((.((((((.((((((((((((.(((((((....((((...........((((((((((......((((.(((((.....((((((((((..
.(((...(((.((((.....)))).))).((.((((......)))).)).))).))))))...)))).....))))).))))..))))))))))......
))))..)))))))..))).))))).)))).)))))).)))).))).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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