miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Ipomoea batatas, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Petunia axillaris subsp. axillaris, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Capsicum annuum, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST008939
species: Ipomoea nil
miRNA family: MIR2673
source: miRNEST

Taxonomy by NCBI:
Ipomoea nil Ipomoea Ipomoeeae Convolvulaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CCTCTTCCTCTTCTTCTTCTT

miRNA*
GAAGATGAAGGGAAGGGAA

mismatches: 2
bulges: 2

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pre-miRNA
TAGGATGAAGTAGAAGATGAAGGGAAGGGAAGGGATTTGATGTAGGCAACATACAATTAAAGAGGAGAAAAATGGGAATGGAGAATCGGTATAGGAGTGA
AGATGAACCTTTAGGAAAGCCCTATAGGAGTAAGCACAATAATGTTCATGATCAGCTTCTTGAATGCACAACTTCTGGTTCCTCCTCTTCTTTATCCTCA
CCTGTAGAATCCCCCTCCTCTTCCTCTTCTTCTTCTTCTTCTTCCC


dot-bracket secondary structure
..(((.((((.((((((.((((((((((((.(((((((....((((...........((((((((((......((((.(((((.....((((((((((..
.(((...(((.((((.....)))).))).((.((((......)))).)).))).))))))...)))).....))))).))))..))))))))))......
))))..)))))))..))).))))).)))).)))))).)))).))).



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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