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Species belonging to selected taxon:

Ipomoea batatas, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Petunia axillaris subsp. axillaris, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Capsicum annuum, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST008954
species: Ipomoea nil
miRNA family: MIR414
source: miRNEST

Taxonomy by NCBI:
Ipomoea nil Ipomoea Ipomoeeae Convolvulaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCATCATCATCATCATCTTCT

miRNA*
 ATTGATGATGATGATGAGC

mismatches: 1
bulges: 2
View larger
pre-miRNA
 TACACAAACCATCATCATCATCATCATCTTCTTCCCCAAAAATTCTTTGAAACCAATGTGAAAAAAAAAACATTTGCTTCTCCCATGGCATTTCCCACCA
CTCCAGAATGGATCATCCCCTGCAACAACAACACTGCAAGGATCAGTAGTAACAGCAGATTGATGATGATGATGAGCAGAAACAG

dot-bracket secondary structure
...........(((((((((((((((...(((..............((((....(((((..........)))))((((........))))..(((.....
.........)))...(((..((((..........)))).)))))))..........))).)))))))))))))))..........


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM mir-598: 0.0007		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record




Liczniki na strone;