miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Ipomoea batatas, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST008954
species: Ipomoea nil
miRNA family: MIR414
source: miRNEST

Taxonomy by NCBI:
Ipomoea nil Ipomoea Ipomoeeae Convolvulaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCATCATCATCATCATCTTCT

miRNA*
ATTGATGATGATGATGAGC

mismatches: 1
bulges: 2

View larger
pre-miRNA
TACACAAACCATCATCATCATCATCATCTTCTTCCCCAAAAATTCTTTGAAACCAATGTGAAAAAAAAAACATTTGCTTCTCCCATGGCATTTCCCACCA
CTCCAGAATGGATCATCCCCTGCAACAACAACACTGCAAGGATCAGTAGTAACAGCAGATTGATGATGATGATGAGCAGAAACAG


dot-bracket secondary structure
...........(((((((((((((((...(((..............((((....(((((..........)))))((((........))))..(((.....
.........)))...(((..((((..........)))).)))))))..........))).)))))))))))))))..........



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-598: 0.0007
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record





Liczniki na strone;