ABOUT THIS RECORDspecies: Ipomoea nil
miRNA family: MIRf519
source: miRNEST
Taxonomy by NCBI:
Ipomoea nil Ipomoea Ipomoeeae Convolvulaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTATAGCATCATGAGCAATCA miRNA* ACTGCTCATGATGTTATAGCT mismatches: 3 bulges: 0 |
pre-miRNA
TTATCCGAACATACTAAGAATGTATAGCATCATGAGCAATCAGCCTTGGAATCTTAGCAGATTGACTGCTCATGATGTTATAGCTAATATAATTTCTCTA
GCT
dot-bracket secondary structure
........((((.......)))).((((((((((((((.((((..(((.........))).)))).)))))))))))))).(((((............))
)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TTATCCGAACATACTAAGAATGTATAGCATCATGAGCAATCAGCCTTGGAATCTTAGCAGATTGACTGCTCATGATGTTATAGCTAATATAATTTCTCTA
GCT
dot-bracket secondary structure
........((((.......)))).((((((((((((((.((((..(((.........))).)))).)))))))))))))).(((((............))
)))
SIMILARITIES| miRBase no hits PMRD ath-miRf11142-akr: 0.00000000008 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
