ABOUT THIS RECORDspecies: Sparus aurata
miRNA family: mir-310
source: miRNEST
Taxonomy by NCBI:
Sparus aurata Sparus Sparidae Percoidei Perciformes Percomorpha Euacanthopterygii Acanthopterygii Holacanthopterygii Euacanthomorpha Acanthomorpha Ctenosquamata Eurypterygii Neoteleostei Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGCAAAAATTAGTTTCAAG miRNA* TGAAAAGAATATGCAGGCT mismatches: 4 bulges: 2 |
pre-miRNA
AAAGGAGGAAGTCGGCAAAAATTAGTTTCAAGAGTTGGGCTTGAGGTAATATTAGATATTATCCAATATTGCGACATTTGCCATCAGATGTTATATTTTT
CACAAATCGAACAGCTGTCATGGCCACTTCAGGCTTTTATTTTGAAAAGAATATGCAGGCTGAGCTGTC
dot-bracket secondary structure
......((.((((.(((...(((..((((((((...((((((((((((((.((.((((((....))))))..)).))).((((((((.((((..((((..
...))))..)))).)))..))))).)))))))))))...))))))))..))).))).))))...))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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AAAGGAGGAAGTCGGCAAAAATTAGTTTCAAGAGTTGGGCTTGAGGTAATATTAGATATTATCCAATATTGCGACATTTGCCATCAGATGTTATATTTTT
CACAAATCGAACAGCTGTCATGGCCACTTCAGGCTTTTATTTTGAAAAGAATATGCAGGCTGAGCTGTC
dot-bracket secondary structure
......((.((((.(((...(((..((((((((...((((((((((((((.((.((((((....))))))..)).))).((((((((.((((..((((..
...))))..)))).)))..))))).)))))))))))...))))))))..))).))).))))...))...
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM Intron_gpI: 0.0006 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
