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Species belonging to selected taxon:

Danio rerio, Oryzias latipes, Salmo salar, Ictalurus punctatus, Oncorhynchus mykiss, Gasterosteus aculeatus, Pimephales promelas, Gadus morhua, Ictalurus furcatus, Oreochromis niloticus, Fundulus heteroclitus, Sparus aurata, Dicentrarchus labrax, Dissostichus mawsoni, Osmerus mordax, Anoplopoma fimbria, Cyprinus carpio, Esox lucius, Takifugu rubripes, Sebastes caurinus, Misgurnus anguillicaudatus, Perca flavescens, Paralabidochromis chilotes, Hippoglossus hippoglossus, Rutilus rutilus, Poecilia reticulata, Oncorhynchus tshawytscha, Paralichthys olivaceus, Psetta maxima, Lates calcarifer, Oncorhynchus nerka, Sebastes rastrelliger, Thymallus thymallus, Solea senegalensis, Coregonus clupeaformis, Thunnus thynnus, Cynoglossus semilaevis, Salvelinus fontinalis



ABOUT THIS RECORD

ID: MNEST009034
species: Sparus aurata
miRNA family: miR-199a
source: miRNEST

Taxonomy by NCBI:
Sparus aurata Sparus Sparidae Percoidei Perciformes Percomorpha Euacanthopterygii Acanthopterygii Holacanthopterygii Euacanthomorpha Acanthomorpha Ctenosquamata Eurypterygii Neoteleostei Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CAGTAGTCTGCACATTGGTTA

miRNA*
 CCCAGTGTTCAGACTACCTGTT

mismatches: 2
bulges: 1
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pre-miRNA
 CCCCCCGCCTGCCCAGTGTTCAGACTACCTGTTCATCAGGCTACAGCTGAACAGTAGTCTGCACATTGGTTAGGCTGGGC

dot-bracket secondary structure
..(((.(((((.(((((((.((((((((.(((((....(((....)))))))))))))))).))))))).))))).))).


SIMILARITIES
miRBase dre-mir-199-3: 1e-30

PMRD no hits

microPC no hits		UniProt no hits

RFAM mir-199: 4e-34		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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