miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Oreochromis niloticus, Sparus aurata, Dicentrarchus labrax, Dissostichus mawsoni, Perca flavescens, Paralabidochromis chilotes, Lates calcarifer, Thunnus thynnus



ABOUT THIS RECORD

ID: MNEST009034
species: Sparus aurata
miRNA family: miR-199a
source: miRNEST

Taxonomy by NCBI:
Sparus aurata Sparus Sparidae Percoidei Perciformes Percomorpha Euacanthopterygii Acanthopterygii Holacanthopterygii Euacanthomorpha Acanthomorpha Ctenosquamata Eurypterygii Neoteleostei Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CAGTAGTCTGCACATTGGTTA

miRNA*
CCCAGTGTTCAGACTACCTGTT

mismatches: 2
bulges: 1

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pre-miRNA
CCCCCCGCCTGCCCAGTGTTCAGACTACCTGTTCATCAGGCTACAGCTGAACAGTAGTCTGCACATTGGTTAGGCTGGGC

dot-bracket secondary structure
..(((.(((((.(((((((.((((((((.(((((....(((....)))))))))))))))).))))))).))))).))).


SIMILARITIES
miRBase dre-mir-199-3: 1e-30

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-199: 4e-34
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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