ABOUT THIS RECORDspecies: Amphimedon queenslandica
miRNA family: mir-9
source: miRNEST
Taxonomy by NCBI:
Amphimedon queenslandica Amphimedon Niphatidae Haplosclerida Ceractinomorpha Demospongiae Porifera Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTTTGCTATTCTTGCTGTAT miRNA* GGAGCAAGAGAAGCAATAGAAGG mismatches: 2 bulges: 2 |
pre-miRNA
ACTTATTGTCCTCTTTGCTATTCTTGCTGTATCTTTTGCTGGTGAATGCAATTCTTATGAGAGAGAGAAGTTGAATGAAAGTTATGAACCTTGTGTCTAT
AATGATCCTATGGGCATACCAACAGTTGGAGTTGGTTTTAACTTGAGGAAAGATGGAGCAAGAGAAGCAATAGAAGGAGTAGGAG
dot-bracket secondary structure
.(((((..(((((((((((.((((((((.((((((((((........))..(((((....)))))..((((((((..((.(((...))).))((((((((
(.......)))))))))((((((.......))))))))))))))...)))))))).)))))))).))))).)).)))))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ACTTATTGTCCTCTTTGCTATTCTTGCTGTATCTTTTGCTGGTGAATGCAATTCTTATGAGAGAGAGAAGTTGAATGAAAGTTATGAACCTTGTGTCTAT
AATGATCCTATGGGCATACCAACAGTTGGAGTTGGTTTTAACTTGAGGAAAGATGGAGCAAGAGAAGCAATAGAAGGAGTAGGAG
dot-bracket secondary structure
.(((((..(((((((((((.((((((((.((((((((((........))..(((((....)))))..((((((((..((.(((...))).))((((((((
(.......)))))))))((((((.......))))))))))))))...)))))))).)))))))).))))).)).)))))))))..
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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