miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Amphimedon queenslandica



ABOUT THIS RECORD

ID: MNEST009056
species: Amphimedon queenslandica
miRNA family: mir-9
source: miRNEST

Taxonomy by NCBI:
Amphimedon queenslandica Amphimedon Niphatidae Haplosclerida Ceractinomorpha Demospongiae Porifera Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCTTTGCTATTCTTGCTGTAT

miRNA*
GGAGCAAGAGAAGCAATAGAAGG

mismatches: 2
bulges: 2

View larger
pre-miRNA
ACTTATTGTCCTCTTTGCTATTCTTGCTGTATCTTTTGCTGGTGAATGCAATTCTTATGAGAGAGAGAAGTTGAATGAAAGTTATGAACCTTGTGTCTAT
AATGATCCTATGGGCATACCAACAGTTGGAGTTGGTTTTAACTTGAGGAAAGATGGAGCAAGAGAAGCAATAGAAGGAGTAGGAG


dot-bracket secondary structure
.(((((..(((((((((((.((((((((.((((((((((........))..(((((....)))))..((((((((..((.(((...))).))((((((((
(.......)))))))))((((((.......))))))))))))))...)))))))).)))))))).))))).)).)))))))))..



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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