ABOUT THIS RECORDspecies: Amphimedon queenslandica
miRNA family: mir-466
source: miRNEST
Taxonomy by NCBI:
Amphimedon queenslandica Amphimedon Niphatidae Haplosclerida Ceractinomorpha Demospongiae Porifera Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TATTTGTGTGTACATGTACAT miRNA* GGTTTTATGATGGACACAAATGTT mismatches: 3 bulges: 2 |
pre-miRNA
TTATGGTGGCTTGCTGATGAGATTACAAGGAGATGCTAACAATTTACAAGGTTTTATGATGGACACAAATGTTTACTTGTTGATAAAGAAGATTGCTTTT
TGAAAGAACGATTAAATCTCTTTTTTATTTATTTGTGTGTACATGTACATGTATTTATGTGTTTCTTTGCCTTATAAAAAGGTCCCCATTGTTTTT
dot-bracket secondary structure
..((((.(((((....(((((....(((((((((((........((((..((..((((.((.(((((((((.........(((.(((((.((((....((
(....)))......))))))))).)))..))))))))).)))))).)).)))).....))))))))))).)))))....))))).)))).......
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTATGGTGGCTTGCTGATGAGATTACAAGGAGATGCTAACAATTTACAAGGTTTTATGATGGACACAAATGTTTACTTGTTGATAAAGAAGATTGCTTTT
TGAAAGAACGATTAAATCTCTTTTTTATTTATTTGTGTGTACATGTACATGTATTTATGTGTTTCTTTGCCTTATAAAAAGGTCCCCATTGTTTTT
dot-bracket secondary structure
..((((.(((((....(((((....(((((((((((........((((..((..((((.((.(((((((((.........(((.(((((.((((....((
(....)))......))))))))).)))..))))))))).)))))).)).)))).....))))))))))).)))))....))))).)))).......
SIMILARITIES| miRBase mmu-mir-466l: 0.00001 PMRD no hits microPC no hits | UniProt sp|Q923G2|RPAB3_MOUSE: 0.00000002 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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