miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Amphimedon queenslandica, Suberites domuncula, Oscarella carmela



ABOUT THIS RECORD

ID: MNEST009061
species: Amphimedon queenslandica
miRNA family: mir-466
source: miRNEST

Taxonomy by NCBI:
Amphimedon queenslandica Amphimedon Niphatidae Haplosclerida Ceractinomorpha Demospongiae Porifera Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TATTTGTGTGTACATGTACAT

miRNA*
GGTTTTATGATGGACACAAATGTT

mismatches: 3
bulges: 2

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pre-miRNA
TTATGGTGGCTTGCTGATGAGATTACAAGGAGATGCTAACAATTTACAAGGTTTTATGATGGACACAAATGTTTACTTGTTGATAAAGAAGATTGCTTTT
TGAAAGAACGATTAAATCTCTTTTTTATTTATTTGTGTGTACATGTACATGTATTTATGTGTTTCTTTGCCTTATAAAAAGGTCCCCATTGTTTTT


dot-bracket secondary structure
..((((.(((((....(((((....(((((((((((........((((..((..((((.((.(((((((((.........(((.(((((.((((....((
(....)))......))))))))).)))..))))))))).)))))).)).)))).....))))))))))).)))))....))))).)))).......



SIMILARITIES
miRBase mmu-mir-466l: 0.00001

PMRD no hits

microPC no hits
UniProt sp|Q923G2|RPAB3_MOUSE: 0.00000002

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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