ABOUT THIS RECORDspecies: Halocynthia roretzi
miRNA family: miR-4206
source: miRNEST
Taxonomy by NCBI:
Halocynthia roretzi Halocynthia Pyuridae Stolidobranchia Ascidiacea Tunicata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATTGAATGGTTTAGTGAGATC miRNA* TCAAACTTGATCATTTAGAGG mismatches: 4 bulges: 0 |
pre-miRNA
GCTACTACCGAATTGAATGGTTTAGTGAGATCCTTGGATTGGCCCCTTCGCGGTCGGCAACGGCCGCGGCGGCGAGCCGAGAAGACGATCAAACTTGATC
ATTTAGAGGAAGTAAAA
dot-bracket secondary structure
..((((.((...((((((((((.(((..((((.((...(((((.((.(((((((((....))))))))).))...)))))...)).))))..))).))))
)))))).)).))))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GCTACTACCGAATTGAATGGTTTAGTGAGATCCTTGGATTGGCCCCTTCGCGGTCGGCAACGGCCGCGGCGGCGAGCCGAGAAGACGATCAAACTTGATC
ATTTAGAGGAAGTAAAA
dot-bracket secondary structure
..((((.((...((((((((((.(((..((((.((...(((((.((.(((((((((....))))))))).))...)))))...)).))))..))).))))
)))))).)).))))...
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM SSU_rRNA_eukarya: 1e-41 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
