miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Ciona intestinalis, Molgula tectiformis, Ciona savignyi, Halocynthia roretzi



ABOUT THIS RECORD

ID: MNEST009062
species: Halocynthia roretzi
miRNA family: miR-4206
source: miRNEST

Taxonomy by NCBI:
Halocynthia roretzi Halocynthia Pyuridae Stolidobranchia Ascidiacea Tunicata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATTGAATGGTTTAGTGAGATC

miRNA*
TCAAACTTGATCATTTAGAGG

mismatches: 4
bulges: 0

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pre-miRNA
GCTACTACCGAATTGAATGGTTTAGTGAGATCCTTGGATTGGCCCCTTCGCGGTCGGCAACGGCCGCGGCGGCGAGCCGAGAAGACGATCAAACTTGATC
ATTTAGAGG
AAGTAAAA


dot-bracket secondary structure
..((((.((...((((((((((.(((..((((.((...(((((.((.(((((((((....))))))))).))...)))))...)).))))..))).))))
)))))).))
.))))...



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM SSU_rRNA_eukarya: 1e-41
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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