ABOUT THIS RECORDspecies: Halocynthia roretzi
miRNA family: miR-4154
source: miRNEST
Taxonomy by NCBI:
Halocynthia roretzi Halocynthia Pyuridae Stolidobranchia Ascidiacea Tunicata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGTTGGTTTTCGGAGCGCG miRNA* TGCATGGAAATAATGGAAT mismatches: 4 bulges: 2 |
pre-miRNA
TGCATGGAAATAATGGAATAGGACCTCGGTTCTATTTTGTTGGTTTTCGGAGCGCGAGGTAATGA
dot-bracket secondary structure
.((.((((((((((((((((((((....))))))))))))).)))))))..))............
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGCATGGAAATAATGGAATAGGACCTCGGTTCTATTTTGTTGGTTTTCGGAGCGCGAGGTAATGA
dot-bracket secondary structure
.((.((((((((((((((((((((....))))))))))))).)))))))..))............
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM SSU_rRNA_eukarya: 3e-25 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
