ABOUT THIS RECORDspecies: Crassostrea gigas
miRNA family: mir-33
source: miRNEST
Taxonomy by NCBI:
Crassostrea gigas Crassostrea Ostreidae Ostreoidea Ostreoida Pteriomorphia Bivalvia Mollusca Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGAATTGTTGTTGCATTGTA miRNA* CGAGGTGACAAAGATTTAGAA mismatches: 3 bulges: 0 |
pre-miRNA
AACATTTTCTAGAAATGCTTCATGAATTGTTGTTGCATTGTAGAAAATTCACCTAAATGCGAGGTGACAAAGATTTAGAAGAGTTTGTAGGGGAGGGA
dot-bracket secondary structure
....(((((((.((((.((((.((((((.(((((((.(((((...............))))).))))))).)))))))))).)))).)))))))....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AACATTTTCTAGAAATGCTTCATGAATTGTTGTTGCATTGTAGAAAATTCACCTAAATGCGAGGTGACAAAGATTTAGAAGAGTTTGTAGGGGAGGGA
dot-bracket secondary structure
....(((((((.((((.((((.((((((.(((((((.(((((...............))))).))))))).)))))))))).)))).)))))))....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM U6: 0.0003 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
