miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Crassostrea gigas



ABOUT THIS RECORD

ID: MNEST009080
species: Crassostrea gigas
miRNA family: mir-33
source: miRNEST

Taxonomy by NCBI:
Crassostrea gigas Crassostrea Ostreidae Ostreoidea Ostreoida Pteriomorphia Bivalvia Mollusca Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATGAATTGTTGTTGCATTGTA

miRNA*
CGAGGTGACAAAGATTTAGAA

mismatches: 3
bulges: 0

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pre-miRNA
AACATTTTCTAGAAATGCTTCATGAATTGTTGTTGCATTGTAGAAAATTCACCTAAATGCGAGGTGACAAAGATTTAGAAGAGTTTGTAGGGGAGGGA

dot-bracket secondary structure
....(((((((.((((.((((.((((((.(((((((.(((((...............))))).))))))).)))))))))).)))).)))))))....


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM U6: 0.0003
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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