ABOUT THIS RECORDspecies: Crassostrea gigas
miRNA family: mir-7
source: miRNEST
Taxonomy by NCBI:
Crassostrea gigas Crassostrea Ostreidae Ostreoidea Ostreoida Pteriomorphia Bivalvia Mollusca Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAAGACTAGTGATTTTGTT miRNA* AAGAATGCCTAGTTGCTAGA mismatches: 5 bulges: 1 |
pre-miRNA
GATATAAGAATGCCTAGTTGCTAGAATTTAAACCTAACTGACTTTCGGACTTGAGCATGCTTGGTGATGGGAATGCTTATTAATCTCTATCCAGTGAGTTC
TGGAAGACTAGTGATTTTGTTG
dot-bracket secondary structure
)..((((((.(((.(((((.(((((((((.......((((......(((..(((((((.((((....)))).)))))))....))).....))))))))))
)))..)))))))).))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GATATAAGAATGCCTAGTTGCTAGAATTTAAACCTAACTGACTTTCGGACTTGAGCATGCTTGGTGATGGGAATGCTTATTAATCTCTATCCAGTGAGTTC
TGGAAGACTAGTGATTTTGTTG
dot-bracket secondary structure
)..((((((.(((.(((((.(((((((((.......((((......(((..(((((((.((((....)))).)))))))....))).....))))))))))
)))..)))))))).))))))..
SIMILARITIES| miRBase lgi-mir-7: 2.0E-6 PMRD no hits microPC no hits | UniProt no hits RFAM 7mir-7: 3.0E-5 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
