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Species belonging to selected taxon:
Crassostrea gigas
,
Mytilus californianus
ABOUT THIS RECORD
ID:
MNEST009082
species:
Crassostrea gigas
miRNA family:
mir-7
source:
miRNEST
Taxonomy by NCBI:
Crassostrea gigas
Crassostrea
Ostreidae
Ostreoidea
Ostreoida
Pteriomorphia
Bivalvia
Mollusca
Protostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGGAAGACTAGTGATTTTGTT
miRNA*
AAGAATGCCTAGTTGCTAGA
mismatches:
5
bulges:
1
View larger
pre-miRNA
ATAT
AAGAATGCCTAGTTGCTAGA
ATTTAAACCTAACTGACTTTCGGACTTGAGCATGCTTGGTGATGGGAATGCTTATTAATCTCTATCCAGTGAGTTC
TGGAAGACTAGTGATTTTGTT
G
dot-bracket secondary structure
..((
((((.(((.(((((.(((((
((((.......((((......(((..(((((((.((((....)))).)))))))....))).....))))))))))
)))..)))))))).)))))).
.
SIMILARITIES
miRBase
lgi-mir-7
:
0.000002
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
mir-7: 0.00003
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
download this record