miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Crassostrea gigas, Mytilus californianus



ABOUT THIS RECORD

ID: MNEST009082
species: Crassostrea gigas
miRNA family: mir-7
source: miRNEST

Taxonomy by NCBI:
Crassostrea gigas Crassostrea Ostreidae Ostreoidea Ostreoida Pteriomorphia Bivalvia Mollusca Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGGAAGACTAGTGATTTTGTT

miRNA*
AAGAATGCCTAGTTGCTAGA

mismatches: 5
bulges: 1

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pre-miRNA
ATATAAGAATGCCTAGTTGCTAGAATTTAAACCTAACTGACTTTCGGACTTGAGCATGCTTGGTGATGGGAATGCTTATTAATCTCTATCCAGTGAGTTC
TGGAAGACTAGTGATTTTGTT
G


dot-bracket secondary structure
..((((((.(((.(((((.(((((((((.......((((......(((..(((((((.((((....)))).)))))))....))).....))))))))))
)))..)))))))).)))))).
.



SIMILARITIES
miRBase lgi-mir-7: 0.000002

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-7: 0.00003
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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