ABOUT THIS RECORDspecies: Patiria pectinifera
miRNA family: miR-2390
source: miRNEST
Taxonomy by NCBI:
Patiria pectinifera Patiria Asterinidae Valvatida Valvatacea Asteroidea Asterozoa Eleutherozoa Echinodermata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTTGTGTGTTTTTGTTTTCC miRNA* ATACAAGAAAAACACCGCTG mismatches: 4 bulges: 2 |
pre-miRNA
CAAGATTTACATCTTTCCACCAGATACAAGAAAAACACCGCTGAAAAAATGCAGCCGACACACACAATAGGACATGAATTTACATAAACTGCACCATTCA
GTTGTGTGTTTTTGTTTTCCCGTTTAACTTTTCTTGTTTG
dot-bracket secondary structure
.(((((....))))).......((.(((((((..((((.((((((....(((((..................................)))))...))))
)).)))).)))))))..)).....................
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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CAAGATTTACATCTTTCCACCAGATACAAGAAAAACACCGCTGAAAAAATGCAGCCGACACACACAATAGGACATGAATTTACATAAACTGCACCATTCA
GTTGTGTGTTTTTGTTTTCCCGTTTAACTTTTCTTGTTTG
dot-bracket secondary structure
.(((((....))))).......((.(((((((..((((.((((((....(((((..................................)))))...))))
)).)))).)))))))..)).....................
SIMILARITIES| miRBase bta-mir-2390: 0.0001 PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
