ABOUT THIS RECORDspecies: Phlebotomus papatasi
miRNA family: miR-4279
source: miRNEST
Taxonomy by NCBI:
Phlebotomus papatasi Phlebotomus Phlebotomus Phlebotominae Psychodidae Psychodoidea Psychodomorpha Nematocera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACTCCTCCCGGCTTCATTGA miRNA* ATTGAAGATCGGGAGGAGTTCT mismatches: 2 bulges: 1 |
pre-miRNA
CTTGCTGATGTACTCTTATTAAATGGTCCAGGATAAAATTGATTGTGTCTTTATTTGGTTGCGGCAGCTCATTGAAGATCGGGAGGAGTTCTTTACTCCT
CCCGGCTTCATTGAAATTGCTGTACTTATTGTAAGTTTCAAACAATTTGGGGTAGTACTGATCGGAAAAGAGTGCCTCTGG
dot-bracket secondary structure
......((.((((((((.((...(((((.((.((.((((((.(((...(((....(((.((((((((.(((.(((((.(((((((((((.....))))))
)))))))))).)))..)))))))).)))....)))...))).))))))...))....))))))).)))))))))).))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTTGCTGATGTACTCTTATTAAATGGTCCAGGATAAAATTGATTGTGTCTTTATTTGGTTGCGGCAGCTCATTGAAGATCGGGAGGAGTTCTTTACTCCT
CCCGGCTTCATTGAAATTGCTGTACTTATTGTAAGTTTCAAACAATTTGGGGTAGTACTGATCGGAAAAGAGTGCCTCTGG
dot-bracket secondary structure
......((.((((((((.((...(((((.((.((.((((((.(((...(((....(((.((((((((.(((.(((((.(((((((((((.....))))))
)))))))))).)))..)))))))).)))....)))...))).))))))...))....))))))).)))))))))).))...
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
