ABOUT THIS RECORDspecies: Pristionchus pacificus
miRNA family: miR-3533
source: miRNEST
Taxonomy by NCBI:
Pristionchus pacificus Pristionchus Neodiplogasteridae Diplogasterida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGAAGTGCGATGTCGATATC miRNA* CATCGACTGTAATTCACGA mismatches: 4 bulges: 2 |
pre-miRNA
NCAGCCTGCATTCATTGGAATGGCATCGACTGTAATTCACGAGACGACCCTACACAGTATCATGAAGTGCGATGTCGATATCAGAAAGGACCTGTATGCC
AC
dot-bracket secondary structure
...((.((((.((.((....(((.((((((.(((.((((.((.((...........)).)).)))).)))...)))))).)))..)).))..)))).)).
..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
Source sequences
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NCAGCCTGCATTCATTGGAATGGCATCGACTGTAATTCACGAGACGACCCTACACAGTATCATGAAGTGCGATGTCGATATCAGAAAGGACCTGTATGCC
AC
dot-bracket secondary structure
...((.((((.((.((....(((.((((((.(((.((((.((.((...........)).)).)))).)))...)))))).)))..)).))..)))).)).
..
SIMILARITIES| miRBase gga-mir-3533: 0.00002 PMRD no hits microPC no hits | UniProt sp|P90689|ACT_BRUMA: 0.000000007 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
Source sequences
download this record
