miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Caenorhabditis elegans, Ancylostoma caninum, Ascaris suum, Heterorhabditis bacteriophora, Pristionchus pacificus, Caenorhabditis japonica, Caenorhabditis brenneri, Strongyloides ratti, Brugia malayi, Trichinella spiralis, Meloidogyne hapla, Heterodera glycines, Meloidogyne incognita, Caenorhabditis remanei, Trichinella pseudospiralis, Onchocerca volvulus, Nippostrongylus brasiliensis, Meloidogyne chitwoodi, Globodera rostochiensis, Strongyloides stercoralis, Ancylostoma ceylanicum



ABOUT THIS RECORD

ID: MNEST009243
species: Pristionchus pacificus
miRNA family: miR-3533
source: miRNEST

Taxonomy by NCBI:
Pristionchus pacificus Pristionchus Neodiplogasteridae Diplogasterida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ATGAAGTGCGATGTCGATATC

miRNA*
 CATCGACTGTAATTCACGA

mismatches: 4
bulges: 2
View larger
pre-miRNA
 NCAGCCTGCATTCATTGGAATGGCATCGACTGTAATTCACGAGACGACCCTACACAGTATCATGAAGTGCGATGTCGATATCAGAAAGGACCTGTATGCC
AC

dot-bracket secondary structure
...((.((((.((.((....(((.((((((.(((.((((.((.((...........)).)).)))).)))...)))))).)))..)).))..)))).)).
..


SIMILARITIES
miRBase gga-mir-3533: 0.00002

PMRD no hits

microPC no hits		UniProt sp|P90689|ACT_BRUMA: 0.000000007

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
Source sequences
download this record




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