ABOUT THIS RECORDspecies: Cyprinus carpio
miRNA family: let-7
source: miRNEST
Taxonomy by NCBI:
Cyprinus carpio Cyprinus Cyprinidae Cyprinoidea Cypriniformes Cypriniphysi Otophysi Ostariophysi Otocephala Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AACTATACAACCTACTGCCTT miRNA* GGTAGTAGGTTGTGTGGTTTC mismatches: 0 bulges: 0 |
pre-miRNA
TCGTACAGGGTGAGGTAGTAGGTTGTGTGGTTTCAGGGTTGTAATTTTGCCCCATCAGGAGATAACTATACAACCTACTGCCTTCCCTGAAGGG
dot-bracket secondary structure
.....(((((.(((((((((((((((((((((((.(((..(((....)))))).....))...)))))))))))))))))))))))))).....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCGTACAGGGTGAGGTAGTAGGTTGTGTGGTTTCAGGGTTGTAATTTTGCCCCATCAGGAGATAACTATACAACCTACTGCCTTCCCTGAAGGG
dot-bracket secondary structure
.....(((((.(((((((((((((((((((((((.(((..(((....)))))).....))...)))))))))))))))))))))))))).....
SIMILARITIES| miRBase dre-let-7b: 7e-39 PMRD no hits microPC no hits | UniProt no hits RFAM let-7: 3e-32 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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