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Species belonging to selected taxon:

Danio rerio, Pimephales promelas, Cyprinus carpio, Rutilus rutilus



ABOUT THIS RECORD

ID: MNEST009377
species: Cyprinus carpio
miRNA family: let-7
source: miRNEST

Taxonomy by NCBI:
Cyprinus carpio Cyprinus Cyprinidae Cyprinoidea Cypriniformes Cypriniphysi Otophysi Ostariophysi Otocephala Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AACTATACAACCTACTGCCTT

miRNA*
GGTAGTAGGTTGTGTGGTTTC

mismatches: 0
bulges: 0

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pre-miRNA
TCGTACAGGGTGAGGTAGTAGGTTGTGTGGTTTCAGGGTTGTAATTTTGCCCCATCAGGAGATAACTATACAACCTACTGCCTTCCCTGAAGGG

dot-bracket secondary structure
.....(((((.(((((((((((((((((((((((.(((..(((....)))))).....))...)))))))))))))))))))))))))).....


SIMILARITIES
miRBase dre-let-7b: 7e-39

PMRD no hits

microPC no hits
UniProt no hits

RFAM let-7: 3e-32
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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