ABOUT THIS RECORDspecies: Lutzomyia longipalpis
miRNA family: mir-1224
source: miRNEST
Taxonomy by NCBI:
Lutzomyia longipalpis Lutzomyia Lutzomyia Phlebotominae Psychodidae Psychodoidea Psychodomorpha Nematocera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCCCTCCTCCTCTCTCCACAT miRNA* GTGCGGTGGGGAGAAGGTTAC mismatches: 5 bulges: 0 |
pre-miRNA
CGCCCCTCATTATGAATCGCCCACCCCTGAGAGCAGAGTGTTCAAATAGGACCCCTCCTCCTCTCTCCACATAGACAGTGAGACCCATGTGCGGTGGGGA
GAAGGTTACTCCTCCCAGAGGAGTAGTCTG
dot-bracket secondary structure
.((...(((...)))...)).....((((.(((((...)))))...))))...(((.((((((.((.(((((..............))))).)).)))))
).))).((((((((...)))))))).....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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CGCCCCTCATTATGAATCGCCCACCCCTGAGAGCAGAGTGTTCAAATAGGACCCCTCCTCCTCTCTCCACATAGACAGTGAGACCCATGTGCGGTGGGGA
GAAGGTTACTCCTCCCAGAGGAGTAGTCTG
dot-bracket secondary structure
.((...(((...)))...)).....((((.(((((...)))))...))))...(((.((((((.((.(((((..............))))).)).)))))
).))).((((((((...)))))))).....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
