miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Litopenaeus vannamei, Lepeophtheirus salmonis, Daphnia pulex, Petrolisthes cinctipes, Penaeus monodon, Artemia franciscana, Caligus rogercresseyi, Homarus americanus, Eriocheir sinensis, Carcinus maenas, Lernaeocera branchialis, Caligus clemensi, Daphnia magna, Gammarus pulex, Calanus finmarchicus, Callinectes sapidus, Fenneropenaeus chinensis

ABOUT THIS RECORD

ID: MNEST009427
species: Caligus rogercresseyi
miRNA family: mir-1207
source: miRNEST

Taxonomy by NCBI:
Caligus rogercresseyi Caligus Caligidae Siphonostomatoida Podoplea Neocopepoda Copepoda Maxillopoda Crustacea Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
TGGGAGGGAGGGAGGGAGGGG

miRNA*
CCGCCTTCCCCCCTTGGGCC

mismatches: 4
bulges: 1

View larger

pre-miRNA
TCCCCCGCCTTCCCCCCTTGGGCCCTGGGAGGGAGGGAGGGAGGGGG

dot-bracket secondary structure
.(((((.((((((((((((.........))))).))))))).)))))

SIMILARITIES

miRBase no hits

PMRD no hits

microPC no hits

UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record