miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Caenorhabditis elegans, Ancylostoma caninum, Ascaris suum, Heterorhabditis bacteriophora, Pristionchus pacificus, Caenorhabditis japonica, Caenorhabditis brenneri, Strongyloides ratti, Brugia malayi, Meloidogyne hapla, Heterodera glycines, Meloidogyne incognita, Caenorhabditis remanei, Onchocerca volvulus, Nippostrongylus brasiliensis, Meloidogyne chitwoodi, Globodera rostochiensis, Strongyloides stercoralis, Ancylostoma ceylanicum



ABOUT THIS RECORD

ID: MNEST009510
species: Meloidogyne hapla
miRNA family: mir-548
source: miRNEST

Taxonomy by NCBI:
Meloidogyne hapla Meloidogyne Meloidogyninae Meloidogynidae Tylenchoidea Tylenchina Tylenchida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CAAAAATGTCAATTATTTTTA

miRNA*
 AAAATATTTAACTTTTGGCA

mismatches: 5
bulges: 1
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pre-miRNA
 TTTGGAATTTTCAAAATATTTAACTTTTGGCAGAAAAAACAGCAAAAATGTCAATTATTTTTAAATCCAAAT

dot-bracket secondary structure
((((((..(((.((((((.((.((.(((.((..........))..))).)).)).)))))).))))))))).


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record




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