miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Mus musculus, Sus scrofa, Bos taurus, Rattus norvegicus, Xenopus laevis, Gallus gallus, Canis lupus familiaris, Ovis aries, Macaca fascicularis, Anolis carolinensis, Trichosurus vulpecula, Papio anubis, Homo sapiens, Taeniopygia guttata, Peromyscus maniculatus bairdii, Pongo abelii, Ursus americanus, Equus caballus, Oryctolagus cuniculus, Macaca nemestrina, Rana catesbeiana, Cynops pyrrhogaster, Ambystoma tigrinum tigrinum, Cavia porcellus, Bos indicus, Meleagris gallopavo, Lonchura striata domestica, Bos sp., Macropus eugenii, Peromyscus polionotus subgriseus, Capra hircus, Pan troglodytes verus, Macaca mulatta



ABOUT THIS RECORD

ID: MNEST009592
species: Ambystoma tigrinum tigrinum
miRNA family: mir-1322
source: miRNEST

Taxonomy by NCBI:
Ambystoma tigrinum tigrinum Ambystoma tigrinum Ambystoma Ambystomatidae Salamandroidea Caudata Batrachia Amphibia Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AATGCTTCTGCTGATGCTGCT

miRNA*
 TGGCCAGCGGCAGGAGATCAA

mismatches: 4
bulges: 2
View larger
pre-miRNA
 ATCCCAACTTTAATGCTTCTGCTGATGCTGCTGCCCTCGACAAGGCCATCAAAGAAAAAGGTGTGAATAAAGGCATCATTATAGACATTTTGACCAAAAG
AAGCAATGGCCAGCGGCAGGAGATCAAAGCTGCAT

dot-bracket secondary structure
....((.((((.((.(((((((((..((((.(((..((.....((...((((((..((.(((((........))))).)).......))))))))....)
).))).))))...))))))))))).)))).))...


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt sp|P07150|ANXA1_RAT: 0.0002

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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