miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Xenopus laevis, Rana catesbeiana, Cynops pyrrhogaster, Ambystoma tigrinum tigrinum



ABOUT THIS RECORD

ID: MNEST009592
species: Ambystoma tigrinum tigrinum
miRNA family: mir-1322
source: miRNEST

Taxonomy by NCBI:
Ambystoma tigrinum tigrinum Ambystoma tigrinum Ambystoma Ambystomatidae Salamandroidea Caudata Batrachia Amphibia Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AATGCTTCTGCTGATGCTGCT

miRNA*
TGGCCAGCGGCAGGAGATCAA

mismatches: 4
bulges: 2

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pre-miRNA
ATCCCAACTTTAATGCTTCTGCTGATGCTGCTGCCCTCGACAAGGCCATCAAAGAAAAAGGTGTGAATAAAGGCATCATTATAGACATTTTGACCAAAAG
AAGCAATGGCCAGCGGCAGGAGATCAAAGCTGCAT


dot-bracket secondary structure
....((.((((.((.(((((((((..((((.(((..((.....((...((((((..((.(((((........))))).)).......))))))))....)
).))).))))...))))))))))).)))).))...



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt sp|P07150|ANXA1_RAT: 0.0002

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record





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