ABOUT THIS RECORDspecies: Cavia porcellus
miRNA family: miR-709
source: miRNEST
Taxonomy by NCBI:
Cavia porcellus Cavia Caviidae Hystricognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGAGGCTGAGGCAGGAGGATC miRNA* CTTGGCTGTGGCTTTGTG mismatches: 4 bulges: 2 |
pre-miRNA
TGCCCGTGAGCACTGCCAGTGTCTTGGCTGTGGCTTTGTGATGTGGGGAAACTGGAACCTGACCGCCTGGGATACGTTTCTTAAACTTTAAGATAGCCCT
GCATGGTGGGGCATGTCTCTTACCCCAGCAGTTAGGAGGCTGAGGCAGGAGGATCGCTGGAGTTCAAGGCCAGC
dot-bracket secondary structure
.(((..(((((....((((((((((.(((.(((((((.((((.(((((.....((.((.((.(((((.(((.......((((((...))))))...))).
....)))))..)).)).))...)))))...)))).))))))).)))...)))).)))))).))))).)))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGCCCGTGAGCACTGCCAGTGTCTTGGCTGTGGCTTTGTGATGTGGGGAAACTGGAACCTGACCGCCTGGGATACGTTTCTTAAACTTTAAGATAGCCCT
GCATGGTGGGGCATGTCTCTTACCCCAGCAGTTAGGAGGCTGAGGCAGGAGGATCGCTGGAGTTCAAGGCCAGC
dot-bracket secondary structure
.(((..(((((....((((((((((.(((.(((((((.((((.(((((.....((.((.((.(((((.(((.......((((((...))))))...))).
....)))))..)).)).))...)))))...)))).))))))).)))...)))).)))))).))))).)))....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM Metazoa_SRP: 0.00000004 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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