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Species belonging to selected taxon:

Cavia porcellus



ABOUT THIS RECORD

ID: MNEST009608
species: Cavia porcellus
miRNA family: miR-709
source: miRNEST

Taxonomy by NCBI:
Cavia porcellus Cavia Caviidae Hystricognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GGAGGCTGAGGCAGGAGGATC

miRNA*
CTTGGCTGTGGCTTTGTG

mismatches: 4
bulges: 2

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pre-miRNA
TGCCCGTGAGCACTGCCAGTGTCTTGGCTGTGGCTTTGTGATGTGGGGAAACTGGAACCTGACCGCCTGGGATACGTTTCTTAAACTTTAAGATAGCCCT
GCATGGTGGGGCATGTCTCTTACCCCAGCAGTTAGGAGGCTGAGGCAGGAGGATCGCTGGAGTTCAAGGCCAGC


dot-bracket secondary structure
.(((..(((((....((((((((((.(((.(((((((.((((.(((((.....((.((.((.(((((.(((.......((((((...))))))...))).
....)))))..)).)).))...)))))...)))).))))))).)))...)))).)))))).))))).)))....



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM Metazoa_SRP: 0.00000004
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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