ABOUT THIS RECORDspecies: Bos indicus
miRNA family: mir-548
source: miRNEST
Taxonomy by NCBI:
Bos indicus Bos Bovinae Bovidae Pecora Ruminantia Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAAAACCGCAATTACTTTTGC miRNA* GAAAGTAATCGCGGTTCTCAC mismatches: 4 bulges: 0 |
pre-miRNA
TACACTGGTGTGAAAGTAATCGCGGTTCTCACCATTACCTTTAGTGGCAAAAACCGCAATTACTTTTGCACAACCTA
dot-bracket secondary structure
.......(((((((((((((.((((((....((((((....))))))....)))))).)))))))))))))......
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TACACTGGTGTGAAAGTAATCGCGGTTCTCACCATTACCTTTAGTGGCAAAAACCGCAATTACTTTTGCACAACCTA
dot-bracket secondary structure
.......(((((((((((((.((((((....((((((....))))))....)))))).)))))))))))))......
SIMILARITIES| miRBase hsa-mir-548o-2: 0.00000000006 PMRD no hits microPC no hits | UniProt no hits RFAM mir-548: 0.0000000000003 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
