miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Mus musculus, Sus scrofa, Bos taurus, Rattus norvegicus, Xenopus laevis, Gallus gallus, Canis lupus familiaris, Ovis aries, Macaca fascicularis, Anolis carolinensis, Trichosurus vulpecula, Papio anubis, Homo sapiens, Taeniopygia guttata, Peromyscus maniculatus bairdii, Pongo abelii, Ursus americanus, Equus caballus, Oryctolagus cuniculus, Macaca nemestrina, Rana catesbeiana, Cynops pyrrhogaster, Ambystoma tigrinum tigrinum, Cavia porcellus, Bos indicus, Meleagris gallopavo, Lonchura striata domestica, Bos sp., Macropus eugenii, Peromyscus polionotus subgriseus, Capra hircus, Pan troglodytes verus, Macaca mulatta

ABOUT THIS RECORD

ID: MNEST009642
species: Bos indicus
miRNA family: mir-548
source: miRNEST

Taxonomy by NCBI:
Bos indicus Bos Bovinae Bovidae Pecora Ruminantia Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
AAAAACCGCAATTACTTTTGC

miRNA*
GAAAGTAATCGCGGTTCTCAC

mismatches: 4
bulges: 0

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pre-miRNA
TACACTGGTGTGAAAGTAATCGCGGTTCTCACCATTACCTTTAGTGGCAAAAACCGCAATTACTTTTGCACAACCTA

dot-bracket secondary structure
.......(((((((((((((.((((((....((((((....))))))....)))))).)))))))))))))......

SIMILARITIES

miRBase hsa-mir-548o-2: 0.00000000006

PMRD no hits

microPC no hits

UniProt no hits

RFAM mir-548: 0.0000000000003

most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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