ABOUT THIS RECORDspecies: Trichinella pseudospiralis
miRNA family: miR-1603
source: miRNEST
Taxonomy by NCBI:
Trichinella pseudospiralis Trichinella Trichinellidae Trichocephalida Enoplia Enoplea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGGTTTGTTTTGTTTTTTTA miRNA* AAGAAATGAACCAGTTCCGTGA mismatches: 3 bulges: 1 |
pre-miRNA
AAAATGAAAAAGTTTTGTATAATGGTTTGTTTTGTTTTTTTATGCATATTTAAAGTGTTGTATTGTTGTGATTGTGGGTGTCCATTTTAGGATGACGCAA
TTACTGCGTTAAGCCATTCGCGTTGGGACGTTTCACAAGCGATTGAATATTATTCAGTTGATGAAAGAAGAAATGAACCAGTTCCGTGAT
dot-bracket secondary structure
(((((......))))).....((((.(((.(((((((((((..(((....(((....)))...))).(((((((((..(((((......))))).)))))
)))).(((((..((.....)).....)))))((((....(((((((((...))))))))).)))).))))))))))).)))..))))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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AAAATGAAAAAGTTTTGTATAATGGTTTGTTTTGTTTTTTTATGCATATTTAAAGTGTTGTATTGTTGTGATTGTGGGTGTCCATTTTAGGATGACGCAA
TTACTGCGTTAAGCCATTCGCGTTGGGACGTTTCACAAGCGATTGAATATTATTCAGTTGATGAAAGAAGAAATGAACCAGTTCCGTGAT
dot-bracket secondary structure
(((((......))))).....((((.(((.(((((((((((..(((....(((....)))...))).(((((((((..(((((......))))).)))))
)))).(((((..((.....)).....)))))((((....(((((((((...))))))))).)))).))))))))))).)))..))))...
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
