miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Caenorhabditis elegans, Ancylostoma caninum, Ascaris suum, Heterorhabditis bacteriophora, Brachionus plicatilis, Pristionchus pacificus, Caenorhabditis japonica, Caenorhabditis brenneri, Strongyloides ratti, Brugia malayi, Trichinella spiralis, Meloidogyne hapla, Heterodera glycines, Meloidogyne incognita, Caenorhabditis remanei, Trichinella pseudospiralis, Onchocerca volvulus, Nippostrongylus brasiliensis, Meloidogyne chitwoodi, Globodera rostochiensis, Strongyloides stercoralis, Ancylostoma ceylanicum



ABOUT THIS RECORD

ID: MNEST009669
species: Trichinella pseudospiralis
miRNA family: miR-1603
source: miRNEST

Taxonomy by NCBI:
Trichinella pseudospiralis Trichinella Trichinellidae Trichocephalida Enoplia Enoplea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATGGTTTGTTTTGTTTTTTTA

miRNA*
AAGAAATGAACCAGTTCCGTGA

mismatches: 3
bulges: 1

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pre-miRNA
AAAATGAAAAAGTTTTGTATAATGGTTTGTTTTGTTTTTTTATGCATATTTAAAGTGTTGTATTGTTGTGATTGTGGGTGTCCATTTTAGGATGACGCAA
TTACTGCGTTAAGCCATTCGCGTTGGGACGTTTCACAAGCGATTGAATATTATTCAGTTGATGAAAGAAGAAATGAACCAGTTCCGTGAT


dot-bracket secondary structure
(((((......))))).....((((.(((.(((((((((((..(((....(((....)))...))).(((((((((..(((((......))))).)))))
)))).(((((..((.....)).....)))))((((....(((((((((...))))))))).)))).))))))))))).)))..))))...



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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Liczniki na strone;