ABOUT THIS RECORDspecies: Tubifex tubifex
miRNA family: miR-4213
source: miRNEST
Taxonomy by NCBI:
Tubifex tubifex Tubifex Tubificidae Tubificina Haplotaxida Oligochaeta Clitellata Annelida Annelida/Echiura/Pogonophora group Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AATATTTTCAACGATTTTTTT miRNA* AAGAAACGAAGAAAAAATTTA mismatches: 4 bulges: 0 |
pre-miRNA
TAAACACACTAAATATTTTCAACGATTTTTTTTTTTCAATTTTAGGCTTTTATCCACTGTAAATCCACCGTAATTTAGCTAACACTTTCTACACTGAGGA
GTGTTTTTTAATTTTTTTGGCTTTCAGCAATTTTTCATAAATGTTAAAAAATATTTTGCAAATGCATACATATTGTGAAGAAGAAGAAACGAAGAAAAAA
TTTATGATTTGT
dot-bracket secondary structure
.........(((((.(((((..((.(((((((((((((..(((.(((.(((((...(((.(((.(((....((.((((..((((((((.(.....).)))
)))))..)))).))...))).)))))).........))))).))).)))(((((..(((....)))...))))).))))))))))))).))..))))).)
))))........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TAAACACACTAAATATTTTCAACGATTTTTTTTTTTCAATTTTAGGCTTTTATCCACTGTAAATCCACCGTAATTTAGCTAACACTTTCTACACTGAGGA
GTGTTTTTTAATTTTTTTGGCTTTCAGCAATTTTTCATAAATGTTAAAAAATATTTTGCAAATGCATACATATTGTGAAGAAGAAGAAACGAAGAAAAAA
TTTATGATTTGT
dot-bracket secondary structure
.........(((((.(((((..((.(((((((((((((..(((.(((.(((((...(((.(((.(((....((.((((..((((((((.(.....).)))
)))))..)))).))...))).)))))).........))))).))).)))(((((..(((....)))...))))).))))))))))))).))..))))).)
))))........
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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