ABOUT THIS RECORDspecies: Lonchura striata domestica
miRNA family: miR-4188
source: miRNEST
Taxonomy by NCBI:
Lonchura striata domestica Lonchura striata Lonchura Estrildinae Estrildidae Passeroidea Passeriformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAAAATGCAATTTTTAAATGC miRNA* TTTTGAATGTTGCCATACC mismatches: 4 bulges: 2 |
pre-miRNA
TAAAGCAGAATAATCATTCAGCTTTTGAATGTTGCCATACCATAACTTTAATTTGTTTCTGTTAAACTGTATACCTGTTGTATGCAAGCTTTCTAGAATT
CTCAGAGGTAAAATGCAATTTTTAAATGCTTTTGGTTTCTGCTATTTT
dot-bracket secondary structure
...(((((((..((((...(((.((((((.(((((..((((..........((((.(((((..((.((((((((.....)))))).)).))..)))))..
..))))))))....))))).)))))).)))..))))))))))).....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TAAAGCAGAATAATCATTCAGCTTTTGAATGTTGCCATACCATAACTTTAATTTGTTTCTGTTAAACTGTATACCTGTTGTATGCAAGCTTTCTAGAATT
CTCAGAGGTAAAATGCAATTTTTAAATGCTTTTGGTTTCTGCTATTTT
dot-bracket secondary structure
...(((((((..((((...(((.((((((.(((((..((((..........((((.(((((..((.((((((((.....)))))).)).))..)))))..
..))))))))....))))).)))))).)))..))))))))))).....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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