miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Mus musculus, Sus scrofa, Bos taurus, Rattus norvegicus, Xenopus laevis, Gallus gallus, Canis lupus familiaris, Ovis aries, Macaca fascicularis, Anolis carolinensis, Trichosurus vulpecula, Papio anubis, Homo sapiens, Taeniopygia guttata, Peromyscus maniculatus bairdii, Pongo abelii, Ursus americanus, Equus caballus, Oryctolagus cuniculus, Macaca nemestrina, Rana catesbeiana, Cynops pyrrhogaster, Ambystoma tigrinum tigrinum, Cavia porcellus, Bos indicus, Meleagris gallopavo, Lonchura striata domestica, Bos sp., Macropus eugenii, Peromyscus polionotus subgriseus, Capra hircus, Pan troglodytes verus, Macaca mulatta



ABOUT THIS RECORD

ID: MNEST009705
species: Lonchura striata domestica
miRNA family: miR-4188
source: miRNEST

Taxonomy by NCBI:
Lonchura striata domestica Lonchura striata Lonchura Estrildinae Estrildidae Passeroidea Passeriformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TAAAATGCAATTTTTAAATGC

miRNA*
 TTTTGAATGTTGCCATACC

mismatches: 4
bulges: 2
View larger
pre-miRNA
 TAAAGCAGAATAATCATTCAGCTTTTGAATGTTGCCATACCATAACTTTAATTTGTTTCTGTTAAACTGTATACCTGTTGTATGCAAGCTTTCTAGAATT
CTCAGAGGTAAAATGCAATTTTTAAATGCTTTTGGTTTCTGCTATTTT

dot-bracket secondary structure
...(((((((..((((...(((.((((((.(((((..((((..........((((.(((((..((.((((((((.....)))))).)).))..)))))..
..))))))))....))))).)))))).)))..))))))))))).....


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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