miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Cynodon dactylon, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST000971
species: Hordeum vulgare
miRNA family: MIR2019
source: miRNEST

Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CGGGTCGGCGCTCCACGCGGC

miRNA*
 GCTTGGGGCCAGACCCGGA

mismatches: 5
bulges: 1
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pre-miRNA
 ATCATCTGGACCGGGTCGGCGCTCCACGCGGCCGTCAACTTCGGGCAGTACCCCTACTCGGGCTACCACCCCAACAAGCCCTTCGGTAAGCCCGAGGCCC
AATGCCGGTGCAGGGGAACGAGGAGTACGCGGGGCTTGGGGCCAGACCCGGAGAAGGGGC

dot-bracket secondary structure
.((.(((...(((((((...((((((.((..((((..(((((.....((.((((..(((((((((((.................))).))))))))((((
......)).)).)))).))..)))))..)))).)).))))))..)))))))))).))...


SIMILARITIES
miRBase no hits

PMRD tae-miR2019: 0.000002

microPC no hits		UniProt sp|P29250|LOX2_ORYSJ: 0.00000001

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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